I believe many of the experts here have gone through this issue,
I have run tRNAscan-SE on my genome to predict all the tRNAs, and have successfully gotten all the tRNA coordinates like start, end and type all arranged in a table.
My question is how can I convert this result to fasta format as long I have all the details about the tRNA ready?
Is there any tool that I can use to get the fasta sequences of the regions described in my table from the original genome?
Sequence tRNA Bounds tRNA Anti Intron Bounds Inf
Name tRNA # Begin End Type Codon Begin End Score Note
-------- ------ ----- ------ ---- ----- ----- ---- ------ ------
NW_011590950.1 1 36704 36632 Ala AGC 0 0 40.8 pseudo