I have RNA-Seq data which is
FPKM. In the dataframe
df first column is
gene_name and the other 100 columns are
Usually if it is
counts data I do like following:
df2 <- aggregate(. ~ gene_name, data = df, max)
I'm not sure what do with the
FPKM data if there are duplicate genes with different
FPKM value for the same sample.
Lets say it looks like this:
gene_name sample1 sample2 sample3 5S_rRNA 0.3206147 0.3327312 0.377578 5S_rRNA 0.3342000 0.0000000 0.1305166
Any suggestions please.