I have an alignment of some full genome sequences of DENV1 that we have recently sequenced from the serum of patients. I have already cleaned the sequences, built the alignments and done the SNPs calling. After that I got the consensus sequences from each sample and I used MEGA to build the alignments of the consensus sequences and to construct a tree etc.
From just looking the alignment of the consensus sequences I can see several nt s differences among the sequences.
Does anyone know if you can export from MEGA like a sort of table where you could see the nt changes for each position and sample?