I need some help with forgi library for visualisation of RNA secondary structure.
I have an RNA sequence and dot-bracket notation of the secondary structure and I would like to plot 2D graph like that you can find here.
The input file is a
.fx file, or a fasta file where the sequence is single-line and the third line is the dot-bracket notation of the RNA structure.
>1y26 CGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUG ((((((((((..(((((((.......)))))))......).((((((.......))))))..)))))))))
If there any other possibilities to plot it in real-time (for instance, in jupyter notebook avoiding any crossing external scripts), I will be very thankful to learn them!