I have seen one of Cellminer tools. I am not sure how do they calculate the cross correlation of the genes, what does it actually mean? Based on what databases?
For example if I take their example input (HUGO format):
abcb1 BRCA2 CNBP
I get the following cross correlation matrix (based on what signals).
Identifier abcb1 BRCA2 CNBP abcb1 1 -0.142 0.069 BRCA2 -0.142 1 0.176 CNBP 0.069 0.176 1