I have two networks with homologous genes from two different species.
To identify homologs I performed a functional comparison. One of the species is not well studied while the other one is the house fly (D. melanogaster). I used ClueGO to predict the functions of the genes in the D. melanogaster network.
I found a function of interest influenced by a set of genes and predicted that the same genes in the other network (thus far uncharacterized) should also perform a similar function.
Q1: How do I check if there are overlapping patterns between both the networks on Cytoscape?
Q2: There are more than 100 homologs in this list and I would like to minimize the list by only considering those homologous genes that are arranged the same as well.