I need to predict disorder of proteins and here there is a description of Iupred in its two variants, long and short-disorder. This is a manuscript defining the method. I couldn't find a precise definition of short or long-disorder.
I need to predict disorder in 30-mers, but I expect that as with secondary structure prediction, the longer the input sequence the more accurate the result.
I will appreciate if anyone has experience with this software and can share ideas or suggestion on how to proceed.