Is there any RNAseq gene/transcript read count database for the mouse? I already know about ARCHS4, looking for some other source.

Thank you

  • 2
    $\begingroup$ You can sometimes get counts from GEO, though that's probably not what you're looking for. $\endgroup$
    – Devon Ryan
    Commented Feb 7, 2019 at 20:03

1 Answer 1


EBI has an expression atlas, including mouse: https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus

If you click on one of the individual experiments you can download tables of TPM or RPKM per gene.

There are currently about 1000 individual experiments in different tissues etc.


Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Not the answer you're looking for? Browse other questions tagged or ask your own question.