Does anyone know where I can download cancer raw reads (fastq files), tumor and Germline for non-humans?
I wanted to make a study with human data but I don't have the control access to download raw reads.
Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. It only takes a minute to sign up.
Sign up to join this communityDoes anyone know where I can download cancer raw reads (fastq files), tumor and Germline for non-humans?
I wanted to make a study with human data but I don't have the control access to download raw reads.
You can try to browse SRA (sequence read archive) at https://www.ncbi.nlm.nih.gov/sra. To download fastq files from SRA, you'll need their sratoolkit: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
The easy command to download fastq files by their accession number is :
fastq-dump --split-files accession_number