I will preface this by saying I'm not a microbiologist, so I apologise for any haziness and I'll be happy to expand.
I would like to download the assemblies of different E. coli genomes and group them by their pathotypes (e.g. EPEC, ETEC, EIEC).
I have used enterobase previously to download salmonella genomes broadly by their subspecies, and it does have a set of E. coli genomes. However, they are mainly annotated by their serotype, and not with any broad nomination of pathogenesis. I think I would be able to use the API to grab these serotypes and map them to a type of pathogenicity but that would probably be quite messy.
Does such a database exist? Most I can find are broadly annotated or a are very detailed, but don't allow access to the raw annotation.
Thanks in advance.