I'm working on a project where I have to assemble sequences generated by RADseq. At the end I hope to compare two species of woodpeckers in Sri Lanka by using SNPs.
I tried to assemble it using Stacks pipeline, but it crushed on the way with:
*** Error in `ustacks': malloc(): memory corruption: 0x000055db58024be0 ***
Are there are any other tools or pipelines that I can use for assembling my data instead?