I've installed Repeatscout from https://bix.ucsd.edu/repeatscout/. I've also installed TRF and nseg required by the program. I followed the steps:
build_lmer_table -l 16 -sequence ~/file_fasta/od_1000.fa -freq od_1000.freq
RepeatScout -sequence od_1000.fa -output od_1000_repeats.fa -freq od_1000.freq -l 16
and the I put this command:
cat od_1000_repeats.fa| filter-stage-1.prl >od_1000_repeats_filt1.fa
but this message appears:
bash: filter-stage-1.prl: command not found...
Why? It is all correctly installed, I can't understand the problem