I am doing simulations using a program 'ms':
If you look at page 3 of this pdf, it explains the output produced by ms. The line which starts with positions tells us the position of segregating sites. But it is between 0 and 1. My simulation produces a chromosome of length 1.1Mb and I want to divide it into 100kb subwindows each. However, I don't know quite understand how I should determine which segregating site (which is a float number) falls into which sub window.
Can someone explain how this can be done?