I am attempting to run a BLAST search remotely using BLAST+.
I can get search to work correctly at the command line with the following commands:
blastp -query proteins.fasta -remote -db nr -out proteins_nr.txt -outfmt 6 -evalue 1e-30
However, I would like to us the remote database titled "Microbial proteins from nr" which is what would be used for the microbial blast search accessing BLAST from the NCBI site.
I'm struggling to find the correct code to access this database instead of just "nr".
Is there a list with the codes of different databases?
Thanks in advance