I have all file names for each paired-end fastq pair as shown below. Could you please suggest how I can extract all fastq.gz files in a single folder?
188833984]$ ls Leaf_T1_FD_R10_L001-ds.3b884c360b1e4ae185408a613b90a3bc Leaf_T1_FD_R2_L001-ds.7db8eb7e3426486db549426601b3a0bd Leaf_T1_FD_R3_L001-ds.147177ecc03a46ccbbce3162d1185a0a
pair end file within sample name Leaf_T1_FD_R10_L001-ds.3b884c360b1e4ae185408a613b90a3bc
188833984]$ cd Leaf_T1_FD_R10_L001-ds.3b884c360b1e4ae185408a613b90a3bc Leaf_T1_FD_R10_L001-ds.3b884c360b1e4ae185408a613b90a3bc]$ ls Leaf-T1-FD-R10_S73_L001_R1_001.fastq.gz Leaf-T1-FD-R10_S73_L001_R2_001.fastq.gz
I need all in fastq.gz format but the problem is that each sample, pair end R1 and R2 fastq reads in a single folder like this: and I need to extract all samples files in a single folder