I was expecting something like in this image:
But when I ran Mutect2, the FILTER field was empty in the output VCF file. How can I enable PASS filters?
chr1 19063526 0 T TAGCTTAGAATGGGATGTC 0 0 DP=1;ECNT=1;MBQ=0,34;MFRL=0,193;MMQ=60,52;MPOS=1;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,0:0,1:0,0,0,1
gatk Mutect2 -R hg38.fa -I test.bam -O test.vcf.gz
GATK -v188.8.131.52 Mutect2 version 2.2 Linux v4.15.0-1044