I have a reference .fasta file and a raw .fastq file with chip-seq data. I am trying to create a bigwig track from the and .fastq and .fasta ref file of the raw signal. Then I would like to do some peak analysis for the chip-seq track.
Can someone help me with googling the write things, I feel really lost while trying to google it and not sure where to start from. I was thinking to do
.fastq -> .bam -> wig -> bigwig and then somehow to do peak detection analysis.