After running a DRIMSeq pipeline and obtaining the genes that are differently used between the null and full models, how do I select the genes that are differently used in the different conditions?
According to the vignette, I would have to use the
plotProportions function and say in the
group_variable the variable of my interest. What if I want a list of the genes that are differently used specifically in the variables of my interest? Checking every gene manually sounds exhausting. Help would be much appreciated.