Questions tagged [adam]

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3 votes
1 answer
130 views

How to convert files to ADAM format?

I would like to convert BAM and VCF files to ADAM format. How do I do that?
Jon Deaton's user avatar
2 votes
1 answer
7k views

How to download dbSNP database?

I am bench-marking the performance of ADAM/Avocado on NGS whole-genome sequencing datasets. I am trying to repeat the tests reported in Frank Nofthat's (author of ADAM and Avocado) thesis, however, I ...
Jon Deaton's user avatar
3 votes
1 answer
173 views

Human Genome Alignment and Variant Calling Benchmarks

I am doing a project that requires bench-marking the performance of computational tools for alignment and variant calling of human genome sequencing data. In particular I would like to establish ...
Jon Deaton's user avatar