Questions tagged [anaconda]

Power all inclusive package used in data science for managing Python and its dependencies

Filter by
Sorted by
Tagged with
4 votes
1 answer

Kallisto error: index input file could not be opened!

I am utilizing Kallisto in Anaconda/miniconda for RNA sequencing. I have successfully made ...
  • 43
1 vote
2 answers

Bioconductor Conda release delay

How long does it take for the latest Bioconductor to end up on Conda? I think I saw a blog post about the challenges with this process, but I cannot find it. For example, Bioconductor 3.13 was ...
  • 2,139
2 votes
1 answer

cmapPy exception

I'm trying to read gctx files with cmapPy. This is my code: ...
0 votes
1 answer

UCSC packages/tools ucsc-netchainsubset and ucsc-fatotwobit not working on GNU/Linux

I have installed some ucsc tools on my Mac computer and it worked fine: Installation ...
  • 2,439
3 votes
1 answer

Why can I not install snakemake on my SLURM computer even though I can find it in the bioconda channel?

I searched for the package 'snakemake' on my SLURM cluster using: conda search --channel bioconda snakemake and I get many versions, up to 5.4.2. I then try to ...
  • 2,439