Questions tagged [beast]

Phylogenetics package based on Bayesian statistics often used in molecular clock calculation

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1answer
16 views

BEAUti not accepting taxa tip dates

I'm using BEAUti as part of my pipeline and the sequence names include | to separate the metadata fields - with culture date being at the very end. When I attempt ...
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0answers
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Failed run beast v2.6.3 using test1.xml in STAECY v1.2.5 pacakage

I am using the package STAECY v1.2.5 in beast v2.6.3. But it failed in testing the test1.xml ...
4
votes
1answer
129 views

Comparing phylogenetic models with different datasets

I'm a linguist interested in phylogenetic tree inference using language data. I'm posting here because I'm using Bayesian phylogenetic methods in my work (probably using BEAST and/or RevBayes). For ...
5
votes
2answers
186 views

Calculate the percentage of each unique phylogenetic tree in a BEAST output

I have a nexus formatted BEAST output containing 20,000 phylogenetic trees of seven taxa. Is there any way to get the percentage of each unique phylogenetic tree contained in this output? I already ...