Questions tagged [cibersortx]

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How to do average macrophages signature boxplots, with Bulk RNA data from 2 control and 2 treatment samples and LM22 signature matrix from cibersort?

I have bulk data from 4 samples of triple negative breast cancer, which 2 of them are control and the other 2 are treated. The goal here is to estimate the average macrophages signatures, for M0,M1 ...
Rita Soares's user avatar
1 vote
1 answer

What statistical test to apply for DE after CibersortX deconvolution?

This question was also asked on Biostars I am running CibersortX in high-resolution mode (which yields estimates of gene values per sample). After that, I want to perform DE between two conditions on ...
Sam's user avatar
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