Questions tagged [circos]
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How to make CIRCOS plot of VCF file?
I have 3 VCF files, I want to make CIRCOS plot just like the following:
https://www.nature.com/articles/s41598-020-70527-8/figures/4
I try to follow the tutorial but could not understand. The genome ...
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2answers
110 views
How to fit all genes (labels) in chromosome ideogram plot made by RCircos package?
I am using Rcircos to make a chromosome ideogram plot for my gene list (n = 45). However, I am getting this error:
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2answers
87 views
Chromosome information for miRNA
Apologies if this question is previously asked. I have a BAM file alignment to hg19 and miRNA gff3 file from ...
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243 views
Circos plot with circlize
This is the post where they made circos using R I'm just following that the part answered by Zuguang Gu, not not sure what I'm doing wrong my file, and the code:
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Circos plot with mutation data
This was my earlier question but now I would like to see patient sample mutation which i have tried and im getting an output but it looks really dumb
So here are my data files and conf file files
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51 views
Cicros plot issue using two data track
Im trying to plot log fold change for a condition as well as no of patient for a particular gene mutated information but whenever im trying to do that i see only only the fold changes labeling not the ...