Questions tagged [circos]

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How to make CIRCOS plot of VCF file?

I have 3 VCF files, I want to make CIRCOS plot just like the following: https://www.nature.com/articles/s41598-020-70527-8/figures/4 I try to follow the tutorial but could not understand. The genome ...
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110 views

How to fit all genes (labels) in chromosome ideogram plot made by RCircos package?

I am using Rcircos to make a chromosome ideogram plot for my gene list (n = 45). However, I am getting this error: ...
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87 views

Chromosome information for miRNA

Apologies if this question is previously asked. I have a BAM file alignment to hg19 and miRNA gff3 file from ...
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243 views

Circos plot with circlize

This is the post where they made circos using R I'm just following that the part answered by Zuguang Gu, not not sure what I'm doing wrong my file, and the code: ...
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77 views

Circos plot with mutation data

This was my earlier question but now I would like to see patient sample mutation which i have tried and im getting an output but it looks really dumb So here are my data files and conf file files ...
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Cicros plot issue using two data track

Im trying to plot log fold change for a condition as well as no of patient for a particular gene mutated information but whenever im trying to do that i see only only the fold changes labeling not the ...