Questions tagged [dataframe]
Central technical term relating to the functional method of data used in R and Python's pandas calculations
4
questions
1
vote
3
answers
458
views
Help to create a dataframe in Python from a FASTA file
I want to create a dataframe in Python starting from a FASTA format file. Given the toy FASTA file that I am attaching, I built this program in Python that returns four colums corresponding to id, ...
1
vote
1
answer
109
views
How to write multi-sequence alignment data frame as a fasta format fast
I have a data frame where the row names are the species names, and each column can either be an Amino-Acid character or "-".
I wish to write it in a fasta format. Simple example of the ...
- 123
1
vote
1
answer
52
views
Adding multiple dataframes to compare against genotypes - DATE/LOCATION - geotemporal incidences of SARS2 genotypes
I'm trying to reuse some code I have previously used to add extra parameters.
In the initial code, it was used to give a 1/0 counter if a specific mutation was present (first code below)
...
- 75
0
votes
1
answer
134
views
Converting hmmer --tblout to pandas dataframe [closed]
Is there a way to convert a hmmer output to a pandas dataframe? I am also unsure how to load a hmmer tblout table into python via the Bio module. I believe you can call a hmmer format with SeqIO.parse ...
- 173