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Questions tagged [distance]

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Does the `mmcif/pdb` format store atomic coordinates in units of Ångstrom, nanometers or something else?

I was surprised as to how hard it was to find a reference on this among the docs. Does the Protein Data Bank mmcif/pdb-x archival format use Angstrom to specify cartesian x,y,z coordinates of atoms or ...
rtviii's user avatar
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1 vote
1 answer

Approach for alignment-free phylogenetic tree generation using kmers

I have a general question about building phylogenetic trees without alignment: I want to build a tree using an alignment-free approach by counting kmers. I have found a lot of information in the ...
rimo's user avatar
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