Questions tagged [embl]
The embl tag has no usage guidance.
4
questions
2
votes
1
answer
24
views
Search ChebiEntity search by common or synonym name?
I can download information from ChEBI if I know the corresponding ChEBI ID:
from libchebipy import ChebiEntity
chebi_entity = ChebiEntity("15903")
And ...
- 1,285
3
votes
1
answer
289
views
How to get the uniparc ids for all members of uniref cluster in batch request?
I currently use the 'UniProt website REST API' (example) to collect the UniParc IDs of all the members of the given cluster. Fetching each entry individually is very slow though, so I wanted to ask if ...
- 121
7
votes
1
answer
386
views
ANY (technical) reason behind submitting sequences to GenBank versus ENA Sequence
The DNA sequence sections of the three INSDC databases (i.e., DDBJ, ENA Sequence and GenBank) are synchronized periodically and strive to keep their stored data as ubiquitously accessible as possible. ...
2
votes
0
answers
195
views
RATT works on example bacterial sequence and other bacterial genome but not on C. elegans genome and annotation
I am trying to use a tool called RATT described in this paper and available here. I ran the example using the following command:
...
- 2,459