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3 votes
2 answers
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Biopython / ETE3 get subtree of a newick tree

I can not find a good example how to extract a subtree from a phylogenetic tree with either library. I can load newick files etc, but not sure how to search for a ...
El Dude's user avatar
  • 195
2 votes
1 answer
419 views

ETE4 manual or improved code description

ETE3 * (Environment for Tree Exploration) is a major package and in particular Python package to navigate phylogenetic trees. It is the premier coding library/package for tree manipulation. ETE4.0.0 ...
M__'s user avatar
  • 12.6k
2 votes
1 answer
589 views

Python scripting with ete3 to query NCBI's Taxonomy: "sqlite3 Warning (can only execute one statement at a time)"

I am using this script: ...
ljs's user avatar
  • 265