Questions tagged [fast5]
The fast5 tag has no usage guidance.
4
questions
1
vote
1answer
38 views
Oxford nanopore promethion; does guppy3 separate fast5 into pass and fail? If not what does?
just a quick question about fast5 pass fail folders. I have been working under the assumption that the fast5 pass fail folders I was given as raw data from our ONT vendor came from them doing base ...
1
vote
1answer
58 views
How do you map nanopore fast5 files?
Is there a best practices for mapping Oxford Nanopore files to a reference?
Is there a tool that can take a tarball of fast5 files and map them directly or do they need to be converted to fastq first?...
4
votes
2answers
1k views
How to get Nanopore MinION fast5 from SRA
I found some Nanopore MinION data on SRA, which I would like to investigate. I use sratoolkit for Illumina data all the time, but I am not sure how to get the ...
12
votes
2answers
2k views
How to convert fastq to fast5
fast5 is a variant of HDF5 the native format in which raw data from Oxford Nanopore MinION are provided. You can easily extract ...
