Questions tagged [figure-explanation]
The figure-explanation tag has no usage guidance.
9
questions
0
votes
1answer
28 views
Multi Omics comparison RNA seq : Condition specific gene signature
The authors of an article are comparing different cell type and the organ type and they show the ontology enrichment of the RNA-seq:
Cell-type-specific and organ-specific marker genes were identified
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1
vote
3answers
465 views
Understanding Single Cell RNAseq Plots
I have just started some single cell RNAseq analysis with 500 cells. I have used Seurat for analysis. Following the guideline I have generated few plots. Now I am trying to understand how to read ...
2
votes
2answers
1k views
What is the name of this type of figure?
This figure comes from this wiki page.
I googled "gene location figure" and "gene location plot", none gets similar results. I also tried search by image, none of the results is close.
so, what is ...
1
vote
1answer
697 views
How to interpret fish plot in R
I am working on subclonal evolution of multiple myeloma. After literature survey, I found people use Fish plot to represent tumor evolution. The example of fish plot can be found here. But I am not ...
2
votes
1answer
60 views
Pathway plot in GeneTrail data base
So I'm doing a pathway analysis using GeneTrail database. One thing I am not able to get is this similarity measure being calculated and plotted:
I want to know how this is being made, what is the ...
0
votes
1answer
177 views
log rank p value interpretation from gepia 2
How do i interpret the overall survival when the p value reported is not significant going by the standard convention .
Not sure what kind of test it runs while comparing the expression may be one ...
1
vote
1answer
413 views
How do I interpret my phylogenetic tree construction from Glucosidases in the Actinobacteria class?
Dear knowledgeable bioinformaticians, I'm currently pursuing an undergraduate degree and as a result I do not have so much knowledge in this topic. I'm having some troubles understanding my ...
4
votes
2answers
110 views
Correlation network representation
I have troubles understanding the figure 10 of this paper:
Similarity network of participating methods for BPO. Similarities are computed as Pearson’s correlation coefficient between methods, ...
5
votes
1answer
42 views
About CAFA experiment
I have a question about CAFA1 and CAFA2 experiment.
CAFA is an experiment that compare computational methods predicting protein functions. In the paper discussing CAFA2, there is an image comparing ...
