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Questions tagged [figure-explanation]

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1answer
81 views

How to interpret fish plot in R

I am working on subclonal evolution of multiple myeloma. After literature survey, I found people use Fish plot to represent tumor evolution. The example of fish plot can be found here. But I am not ...
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1answer
28 views

Pathway plot in GeneTrail data base

So I'm doing a pathway analysis using GeneTrail database. One thing I am not able to get is this similarity measure being calculated and plotted: I want to know how this is being made, what is the ...
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1answer
39 views

log rank p value interpretation from gepia 2

How do i interpret the overall survival when the p value reported is not significant going by the standard convention . Not sure what kind of test it runs while comparing the expression may be one ...
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1answer
64 views

How do I interpret my phylogenetic tree construction from Glucosidases in the Actinobacteria class?

Dear knowledgeable bioinformaticians, I'm currently pursuing an undergraduate degree and as a result I do not have so much knowledge in this topic. I'm having some troubles understanding my ...
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0answers
172 views

Program to make a haplotype network for a specific gene

Currently my lab manually uses pop art to make the network after using PHASE to id an individual's alleles. Example: I just feel like there's got to be a better, more time effective way to do this.
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2answers
45 views

Correlation network representation

I have troubles understanding the figure 10 of this paper: Similarity network of participating methods for BPO. Similarities are computed as Pearson’s correlation coefficient between methods, ...
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1answer
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About CAFA experiment

I have a question about CAFA1 and CAFA2 experiment. CAFA is an experiment that compare computational methods predicting protein functions. In the paper discussing CAFA2, there is an image comparing ...