Questions tagged [format-conversion]

Questions relating to the conversion of one format (e.g. FASTQ) into another (FASTA).

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13
votes
8answers
7k views

How to convert fasta file to tab delimited file

I have a fasta file like >sample 1 gene 1 atgc >sample 1 gene 2 atgc >sample 2 gene 1 atgc I want to get the following output, with one break between ...
19
votes
7answers
10k views

How to convert FASTA to BED

I have a FASTA file: ...
9
votes
3answers
3k views

How to convert GFF3 to GTF2

I would like to convert a file in gff3 format to a gtf2.2 format. The reason why I would like to do this is: I have a set of ...
7
votes
2answers
1k views

How can I convert SCF trace files to ABI files?

I have a large collection of sequence trace files which are in SCF file format (binary files that in addition to the string of DNA bases also contain the electropherogram of the sample and quality ...
3
votes
2answers
3k views

Existing tool for converting gff3 to genbank (gbk)

I want to convert my gff3 annotation files to genbank format for use in Mauve. I found the seqret tool here https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/ which can perform this task, but my files (...