Questions tagged [functional-annotation]
The functional-annotation tag has no usage guidance.
6
questions with no upvoted or accepted answers
2
votes
0
answers
26
views
MAGs transcriptomics pipeline question
I have currently a following problem. I have a one sample that I did my metagenomics on (Illumina shotgun + nanopore) and have recovered some high quality MAGs. I also did a metatranscriptomics on the ...
- 108
2
votes
0
answers
229
views
How to get the GO information for all the human genes?
I would like to retrieve a list of all the human genes and their proteins’ functional classification.
The Gene type attribute on ensembl.org is not specific ...
- 1,427
1
vote
0
answers
36
views
Gene Ontology equivalent - higher specificity?
I've recently discovered OrthoVenn2, which I'm using to compare proteomes and extract likely clade-specific genes. I'm enjoying software, and one of the things it offers is a breakdown of protein ...
- 859
1
vote
0
answers
16
views
SwissProt Proteins into my Jbrowser
How is it possible to get the SwissProt Proteins into my Jbrowser in the same way like shown below?
Thank you in advance,
- 453
1
vote
0
answers
186
views
Downloading full search results from BlastKOALA?
I have just started using BlastKOALA KEGG which has been useful in annotating (aminoacid) sequences. This is their website: https://www.kegg.jp/blastkoala/
When you get results, there are links for ...
- 111
1
vote
0
answers
40
views
How to run SIFTER stand-alone version
I have downloaded the core version of SIFTER. I am not able to run it because I get the following error.
...
- 11