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Questions tagged [galaxy]

A framework for doing bioinformatics in a GUI, on the cloud. Free.

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What Galaxy tools can annotate a de novo assembly RNA seq plant transcripts?

What Galaxy tools can annotate a de novo assembly RNA seq plant transcripts? How to do it using Python API?
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17 views

How to upload and process a data set to Galaxy instance and retrieve results programmatically?

How to upload and process (de novo assembly pipe) a data set to Galaxy instance and retrieve the results programmatically? Are there any packages beyond BioBlend?
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28 views

galaxy output bam file sorted

I included a new tool in galaxy and I get the following debug msg: ...
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1answer
28 views

Including Picard tool in galaxy

I am running the Picard tool CollectSequencingArtifactMetrics in galaxy (locally in my pc). The output files are saved into disk and not passed to stdout and (I guess) they can't be passed as output ...
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92 views

Create galaxy local toolshed using Planemo

I tried to create galaxy local toolshed using planemo. I used command as follows, create virtual env virtualenv .venv; .venv/bin/activate Install planemo ...