Questions tagged [galaxy]

A framework for doing bioinformatics in a GUI, on the cloud. Free.

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use Kallisto in galaxy

I want to use kalisto for sequence alignment in Galaxy. i found this field empty: there is no option available for the reference transcriptome. how I can get one? Can I let the other configuration by ...
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FastQC and Trimmomatic in Galaxy?

I am independently working on data retrieved SRA database, paired-end data as separate inputs. The proceedure I followed is, After running FastQC using Galaxy, the majority of the modules have failed....
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galaxy output bam file sorted

I included a new tool in galaxy and I get the following debug msg: ...