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Questions tagged [genomicranges]

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3
votes
1answer
35 views

How to find genomic overlaps faster?

I was trying to find a way to find overlaps between two genomic ranges. I found a post at Biostars but it couldn't consider the chromosome information. For example: ...
0
votes
1answer
51 views

Expand granges object different amounts upstream vs. downstream

I am attempting to get gene regions and their immediate neighborhoods using Bioconductor GenomicRanges packages. It is very easy for me to extend the regions around genes if I want to extend it the ...
5
votes
3answers
76 views

How to subset a GRanges via an argument passed into a function?

Let's say I have following example GRanges: ...