Questions tagged [geoquery]

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How can I collapse probes to single value per gene using GEOquery?

I have extracted microarray gene expression data from GEO using the GEOquery package in R. There are multiple probes per gene. Is there a way to select the best ...
1 vote
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Mapping GPL Platform Number to Microarray Name

I am trying to download a dataset from GEO using the GEOquery R package. Using this package, I can retrieve the GPL platform number(s) for the dataset, and I hope to use a CDF file from BrainArray on ...
-1 votes
1 answer

Error downloading GSE dataset

I've installed GEOquery with >install.packages("BiocManager") >BiocManager::install("GEOquery") >library(GEOquery). then I ran the ...