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How to pack up a Python script in the form a Dockerfile

I have a simple Python script with this header ...
Angel's user avatar
  • 1,981
1 vote
1 answer

Manta Evidence Folder Is Empty

I am looking at Manta on Github and I ran a bit of code: The following variables were defined in the code: input_dir is the file path to a folder with less than 10 ...
Indira's user avatar
  • 380
8 votes
3 answers

What are the ways to keep track of branches in the analysis?

I'm going through an RNA-seq pipeline in R/Bioconductor and want to try multiple parameters at subsequent steps, for example, running clustering with different ...
Peter's user avatar
  • 2,624
27 votes
8 answers

How to version the code and the data during the analysis?

I am currently looking for a system which will allow me to version both the code and the data in my research. I think my way of analyzing data is not uncommon, and this will be useful for many people ...
Iakov Davydov's user avatar