Questions tagged [gviz]
The gviz tag has no usage guidance.
8
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Gviz Coverage Plots
Cross-posted on biostars: https://www.biostars.org/p/9565667/
I have two bam files from single-cell RNA sequencing mapped to the reference genome using CellRanger, I can view them in IGV and I have a ...
- 11
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Combining dataTracks in Gviz by averaging or subtraction
I would like to average (and maybe also additional operations such as subtraction) 2 or more DataTracks and plot the result using the Gviz (https://bioconductor.org/packages/release/bioc/html/Gviz....
- 11
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2
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90
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Easy way to create gene plot in gviz?
I would like to create a simple plot of a given human gene containing the main features, e.g. exons, introns, ORFs, transcripts etc. I understand that gviz is a ...
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3
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How to plot genomic.fna fasta file in R using Gviz?
I downloaded the genome of Staph aureus as DNA sequence from NCBI. I would like to visualize it using Gviz. Is Gviz the right tool to visualize genomes? What are the necessary steps from the sequence ...
- 1,273
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3
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How can I install bioconductor-gviz and use it in jupyter notebook?
I tried to install gviz in a conda environment, but that library seems to be incompatible to python and r. I tried to setup a clean environment using
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2
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How to plot circular chromosomes with Gviz?
I am using Gviz to plot several tracks. I create a GenomeAxisTrack() and then several AnnotationTrack()s that I feed to ...
- 3,878
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How to make chromosome color maps for bed ranges
I have genomic .bed file data of 4 different types; type A,B,C,D. These are some examples-
Type A:
1 101380000 101710000 A
1 110085000 110320000 A
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7
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How can I colour boxes in Gviz AnnotationTrack in R?
I'm learning the Gviz bioconductor package, I generate a plot as follows:
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