Questions tagged [hg19]
The hg19 tag has no usage guidance.
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How important are the homozygous variants that get unnecessarily deleted using liftover?
I'm referring to the text described here:
These tools [NCBI remap, CrossMap] operate only on the sites present in an input VCF, and return the representation of those sites in a new genome assembly. ...
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Is a human genome file with reference as NCBI37 the same as hg19?
This question was also asked on Biostars
In other words, are NCBI37 and hg19 synonymous? I can't find much information for what NCBI37 is in a human (not mouse) genome.
The VCF is from a lab ...
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Converting .bw files to .fq (fastq)
I am able to convert .bw files to .fq(fastq) manually in Shell, but I would like to automate the process coz I have hundreds of .bw file that I need to convert. Till now, I could think of following ...
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HG19 Position meaning
I am looking at genomic data (HG19). I have many SNPs, their chromosomes and positions.
I want to look at certain SNP (suppose its chromosome is 1 and position 77,226,919), and extract all SNPs in ...
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Get regions' information from DNA sequence data (bsgenome.hsapiens.ucsc.hg19)
I have a problem in R. I have the following dataSet (the first three rows shown) (the 5th number is the methylation level in its region):
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Gene information from chromosome location
I have a file that contains species name, chromosome, start and end locations like the following format
hg19,chr8,77778733,77779026. I would like to know some ...
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