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Questions tagged [homework]

Use for questions that are associated with canned problems, where either the solution is typically known in advance, or data are simulated to create a specific situation.

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Inspection of gene expression in scRNA-seq data

I am running the data preprocessing pipeline for scRNA-seq data presented here. Gene expression In addition to removing cells with poor quality, it is usually a good idea to exclude genes ...
gc5's user avatar
  • 1,813
4 votes
2 answers

Finding a single open reading frame with ribosomal binding site, using Biopython

I'm given a Fasta file, containing a large DNA(over 115,000 long) sequence, and I am tasked with finding a single large open reading frame contained within the DNA sequence using Biopython. I'm ...
daenwaels's user avatar
2 votes
4 answers

I have really skewed RNA-seq data, what's the best way to normalise it? Preferably in R!

My data frame compares the RNA-seq reads from many genes in different tissues. The reads look as follows. I tried using log to make it better but still looks pretty skewed. Are there any better ...
Connor's user avatar
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