Questions tagged [hpc]

Acronym for "high performance computing"

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Snakemake fails because it cannot create logs inside a read-only Singularity Container

I am using Snakemake from inside a Singularity container. Because of that, the directory that Snakemake wants to log to cannot be created, and I get an ...
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Load balancing numerous single-threaded processes with Snakemake on the grid

I'm familiar with running Snakemake in a DRMAA-enabled grid environment. (Most often, I write Python programs as wrappers and invoke the workflow via Snakemake's Python API.) Typically, I'm running ...