Questions tagged [indexing]
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Samtools Index: Chromosome Blocks not Continuous
I am working with short-read whole-genome sequences from the NCBI's SRA. I have aligned and sorted all of my short-read sequences and am attempting to index each sequence into .bai format using ...
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How should I imagine the pre-indexing of suffix arrays in the STAR RNA Seq-aligner?
I'm using STAR for an internship (fusion-genes in ALL cancer) and I'd like to understand what exactly it is doing. The people at the internship don't know either how it works, given their biology ...
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