Questions tagged [khmer]
The khmer tag has no usage guidance.
2
questions
9
votes
1answer
337 views
How to get the count of each kmer past 255 using khmer
I have a Fastq file and I want to get the exact count of each possible kmer from this file.
On a previous post called How to use khmer to count k-mers? Daniel Standage proposed a custom script based ...
8
votes
2answers
9k views
How to use Python to count k-mers?
I have some FASTQ sequence files and a FASTA file for some regions I'm interested in.
I would like:
Build an index for the FASTA file
Use the index to count number of k-mers occurred in my sequence ...
