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3 votes
1 answer
362 views

"perl: warning: Setting locale failed." in RepeatMasker

I'm trying to run Repeatmasker in Linux on the command line with: ...
RNAdey's user avatar
  • 31
2 votes
0 answers
512 views

TBLASTN error: Too many positional arguments

I was running tblastn using standalone blast2.9.0+ through Ubuntu Linux, to get the alignment result of a list of protein sequences for same species, against its complete genome file. The command I ...
web's user avatar
  • 71
1 vote
0 answers
24 views

OsError in virtual box snakemake pipeline for array-analysis

The rule is written for calling genotypes using array analysis cli for illumina gsa chips. ...
lesserFlamingo's user avatar
1 vote
0 answers
196 views

Removing adapters + primers from fastq files

I am currently in the process of removing adapters and primers from some 16S data acquired, and have a conceptual question regarding this pre-processing step: So there are a series of different primer ...
h3ab74's user avatar
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1 vote
0 answers
427 views

tmhmm installation and running

I am trying to predict transmembrane protein using tmhmm-2.0c. According to Package instruction, I have changed the path of perl inside the program like as ...
Kishor Kumar Sarker's user avatar
0 votes
0 answers
33 views

How to access specific SRA sequences within an SRP file?

How do you get a specific 100 SRA sequences from a Bioproject which contains 400 runs, when you don't need all of them?
K_081's user avatar
  • 149
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0 answers
138 views

Locate the saved template of minknow

I am using minknow on ubuntu. After saving the template (settings), where is that file locally stored in the system? Also what is its format/extension?
K.Harini's user avatar