Questions tagged [loop]

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2answers
46 views

Error after trimming illumina adapters

I am removing illumina adapters of the NGS data with a loop. My NGS data is storage in /data/HTS_seq/. I used this function: ...
1
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1answer
47 views

How do I set a neural network to loop multiple times and average the resulting values?

I have a script in R/RStudio which creates random datasets of binomial variables, feeds them through a neural network, and calculates their likelihood ratio statistic and deviance. I'd like the script ...
-1
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3answers
111 views

How I can push a function to act on my files

I have R code takes a vcf file returns a parsed .txt output. I have 21 vcf files in a folder I named my R code parse_vcf_alt1 function
-1
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1answer
38 views

Appending some columns from one tabular file to another

I have a list of files in which I have this information ...
1
vote
2answers
117 views

How can I run a command for multiple files?

I have a bunch of .vcf files in a folder and I want to run command below on all of them but doing that one by one manually is really painful. I am seeking for a way ...
2
votes
1answer
197 views

How I loop over this code

I have 139 samples; In R for each sample I run below codes for example for sample 1 ...