Questions tagged [maftools]

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maftools tcgaCompare plot: x-axis labels getting clipped

I have a {maftools} plot: whatever I try to save that completely I see the down part of plot is trimmed like I have tried both save as pdf and save as image options which did not differ Any ...
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Permanent error with maftools

I want to remove variant including in copy number changed area by maftools but I am permanently get this error ...
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maf file format: Variant_Classification value for non frameshift substitution

I have a vcf containing SNV and MNV (short indells or substitutions), I annotate that file whit annovar and in the resulting txt file I have this row ...