Questions tagged [maxquant]
The maxquant tag has no usage guidance.
5
questions
0
votes
0answers
11 views
How to run conda/mono jobs in docker-compose container with celery job control?
I am looking for examples of how to set up biological data processing pipelines with docker-compose and celery. The standard celery docker image does not have all dependencies. What is the best way to ...
1
vote
1answer
22 views
Getting System.IO.FileNotFoundException with MaxQuant running on Linux with mono
I am getting this error with MaxQuant 1.6.14 running with mono (5.14.0.177=he1b5a44_1001).
System.IO.FileNotFoundException: Could not find file "/home/ubuntu/run-dir/combined/combinedRunInfo&...
1
vote
2answers
1k views
Running MaxQuant on Linux
I'm trying to run MaxQuant on a linux laptop, hower I'm constantly running into problems with MaxQuant crashing at different stages
I tried to use
mono 6.8
mono 5.4.1
on
centos
ubuntu
each with ...
1
vote
0answers
30 views
What is the purpose of the "fixedSearchFolder" and "fixedCombinedFolder" in MaxQuant?
What is the purpose of changing the fixedSearchFolder and fixedCombinedFolder in MaxQuant proteomics software? Is there any data ...
1
vote
1answer
407 views
What is the purpose of 'Folder locations' in MaxQuant?
MaxQuant is a tool for proteomics quantification. In the settings under Global parameters / Folder locations are three folder locations that are possible to be ...