Questions tagged [maxquant]
The maxquant tag has no usage guidance.
7
questions
1
vote
1
answer
105
views
maxquant error: Unhandled Exception: System.IndexOutOfRangeException: Index was outside the bounds of the array
An error occurred while I was running the program maxquant (2.0.3):
Reading search engine results (SP)
Unhandled Exception:
System.Exception: Exception during execution of external process: 1228404
...
- 21
3
votes
0
answers
117
views
Setting up MaxQuant parameters for processing proteomics data
This is a follow up to my previous question here.
In relevance to my research, I've been looking for proteomics data (control vs. diabetic) and I found a dataset in the article "Diabetes causes ...
- 125
2
votes
2
answers
35
views
Why does this modification site file contain duplicate sites and multiple related proteins?
The data below is coming from a MaxQuant post-translational protein modification (PTM) site file.
Why does it contain duplicate sites (yellow) and proteins (cyan)?
Source data
http://ftp.ebi.ac.uk/...
- 131
1
vote
1
answer
98
views
Getting System.IO.FileNotFoundException with MaxQuant running on Linux with mono
I am getting this error with MaxQuant 1.6.14 running with mono (5.14.0.177=he1b5a44_1001).
System.IO.FileNotFoundException: Could not find file "/home/ubuntu/run-dir/combined/combinedRunInfo&...
- 1,295
1
vote
2
answers
3k
views
Running MaxQuant on Linux
I'm trying to run MaxQuant on a linux laptop, hower I'm constantly running into problems with MaxQuant crashing at different stages
I tried to use
mono 6.8
mono 5.4.1
on
centos
ubuntu
each with ...
- 113
1
vote
0
answers
48
views
What is the purpose of the "fixedSearchFolder" and "fixedCombinedFolder" in MaxQuant?
What is the purpose of changing the fixedSearchFolder and fixedCombinedFolder in MaxQuant proteomics software? Is there any data ...
- 1,295
1
vote
1
answer
828
views
What is the purpose of 'Folder locations' in MaxQuant?
MaxQuant is a tool for proteomics quantification. In the settings under Global parameters / Folder locations are three folder locations that are possible to be ...
- 1,295