Questions tagged [merge]

As a command 'merge' relates to merging two dataframes in either R or Python's pandas

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Impact of merging ChIP-seq runs of the same sample on PCR duplicates identification?

I'd like to a follow up question to this question related to merging fastq files for ChIP-seq. Let's assume we have one sample library that is re-sequenced two or three times in order to achieve a ...
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22 views

How to merge several microarray-based gene expression datasets while not excluding genes that are not present in all datasets?

In integrative gene expression analysis when two expression matrices from different datasets are merged together, they are usually merged by common genes in both expression matrices while all other ...
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1answer
56 views

Making a union data from different list of genes

I have two groups of patients I have a list of driver genes Clearly each group have mutation in a subset of these gene some of which are common between two groups and some of which are unique to one ...
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0answers
40 views

merge list of datasets by row IDs in R

I have a list of dataframes with two columns each: $1 = transcript ID, $2 = expression counts (tpm), coming from import of ...
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2answers
80 views

merge rows (to columns) in R dataframe based on IDs

I have a dataframe with two columns: $1 = transcript ID, $2 = expression counts (tpm). This comes from a merging of several ...
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4answers
535 views

Merging regions according to their identifier

I have a huge file (20 GB) which has a range of genomic locations, and for each location there is an identifier(4th column), ...
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3answers
3k views

Is it possible to merge scRNAseq data from experiments with different design?

I have 4 different single-cell RNAseq experiments, each one representing a different sample of cell type population. I'd like to merge them to a single dataset. However, different cell types are ...