Questions tagged [merge]

As a command 'merge' relates to merging two dataframes in either R or Python's pandas

4 questions with no upvoted or accepted answers
Filter by
Sorted by
Tagged with
3 votes
0 answers

How to remove redundancy from a gtf file?

I have an annotation file. I would like to remove redundancy, as shown in the example (in the real file, I have a lot of these redundant cases). I would like to consider only one of the following ...
Marco's user avatar
  • 161
2 votes
0 answers

bcftool merge of 5K samples makes ID a large string

I am using bcftools to merge 5000+ vcf files using this command bcftools merge -l list_of_vcfs.txt I am getting the following error ...
bioinfo_comp's user avatar
2 votes
0 answers

Subsetting out prefix from genes and merging

I'm working with PTX samples (human and mouse), they're aligned to both transcriptomes and so gene names contain hg38- and mm10- at the beginning of each gene. I have eliminated teh prefixes because I ...
mmpp's user avatar
  • 371
1 vote
0 answers

Title: Error merging VCF files: "The REF prefixes differ: G vs A"

I'm trying to merge two VCF files, but I'm running into an error message that says ...
El K's user avatar
  • 11