Questions tagged [molecular-dynamics]

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Tutorial for DESMOND steered molecular dynamic simulation

I would like to perform a DESMOND steered molecular dynamic simulation. Til now, I found that I can use the biasing force plugin. Is there any tutorial about how to do this type of simulation?
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Gromacs molecular dynamic simulation throwing error during minimization

I am trying to investigate a membrane proteins influence on a lipid bilayer using molecular dynamics. I am new to MD and trying to run my first simulation. I have built the simulation input files ...