Questions tagged [multi-allelic]
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Combine all alternate alleles
I have a vcf with multi-allelic SNPs, e.g. REF: A and ALT: G, C.
I would like to combine all reference alleles to the most ...
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What is the correct way of setting the genotype after splitting multi-allelic sites in a VCF file?
This question was also asked on Biostars
Consider this minimal VCF file which contains a multi-allelic call made by a somatic variant caller on a human tumor sample:
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